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Index
A
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C
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D
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F
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G
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I
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L
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N
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P
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R
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S
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T
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U
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V
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X
A
analyse_structure() (PolyhedralSiteCollection method)
(SiteCollection method)
(SphericalSiteCollection method)
(Trajectory method)
(VoronoiSiteCollection method)
append_timestep() (Trajectory method)
as_dict() (Atom method)
(PolyhedralSite method)
(Site method)
(SphericalSite method)
(VoronoiSite method)
assign_coords() (Atom method)
assign_site_occupations() (PolyhedralSiteCollection method)
(SiteCollection method)
(SphericalSiteCollection method)
(Trajectory method)
(VoronoiSiteCollection method)
assign_vertex_coords() (PolyhedralSite method)
at (Trajectory attribute)
Atom (class in site_analysis.atom)
atom_by_index() (Trajectory method)
atom_sites (Trajectory attribute)
atoms_from_indices() (in module site_analysis.atom)
atoms_from_species_string() (in module site_analysis.atom)
atoms_trajectory (Trajectory attribute)
C
centre() (PolyhedralSite method)
(Site method)
(SphericalSite method)
(VoronoiSite method)
cn (PolyhedralSite attribute)
construct_neighbouring_sites() (in module site_analysis.polyhedral_site_collection)
contains_atom() (PolyhedralSite method)
(Site method)
(SphericalSite method)
contains_atoms (PolyhedralSite attribute)
(Site attribute)
contains_point() (PolyhedralSite method)
(Site method)
(SphericalSite method)
(VoronoiSite method)
contains_point_simplex() (PolyhedralSite method)
contains_point_sn() (PolyhedralSite method)
coordination_number (PolyhedralSite attribute)
coordination_number() (Site method)
D
delaunay (PolyhedralSite attribute)
F
frac_coords (Atom attribute)
,
[1]
(VoronoiSite attribute)
from_dict() (site_analysis.atom.Atom class method)
(site_analysis.polyhedral_site.PolyhedralSite class method)
(site_analysis.site.Site class method)
(site_analysis.spherical_site.SphericalSite class method)
(site_analysis.voronoi_site.VoronoiSite class method)
from_file() (site_analysis.atom.Atom class method)
from_str() (site_analysis.atom.Atom class method)
G
get_nearest_neighbour_indices() (in module site_analysis.tools)
get_vertex_indices() (in module site_analysis.tools)
get_vertex_species() (PolyhedralSite method)
I
in_site (Atom attribute)
index (Atom attribute)
(PolyhedralSite attribute)
(Site attribute)
L
label (PolyhedralSite attribute)
N
neighbouring_sites() (PolyhedralSiteCollection method)
(SiteCollection method)
P
points (PolyhedralSite attribute)
(Site attribute)
PolyhedralSite (class in site_analysis.polyhedral_site)
PolyhedralSiteCollection (class in site_analysis.polyhedral_site_collection)
R
reset() (Atom method)
(PolyhedralSite method)
(Site method)
(Trajectory method)
reset_index() (site_analysis.site.Site class method)
reset_site_occupations() (SiteCollection method)
S
Site (class in site_analysis.site)
site_analysis.atom (module)
site_analysis.polyhedral_site (module)
site_analysis.polyhedral_site_collection (module)
site_analysis.site (module)
site_analysis.site_collection (module)
site_analysis.spherical_site (module)
site_analysis.spherical_site_collection (module)
site_analysis.tools (module)
site_analysis.trajectory (module)
site_analysis.voronoi_site (module)
site_analysis.voronoi_site_collection (module)
site_by_index() (SiteCollection method)
(Trajectory method)
site_coordination_numbers() (Trajectory method)
site_index_mapping() (in module site_analysis.tools)
site_labels() (Trajectory method)
site_occupations (Trajectory attribute)
SiteCollection (class in site_analysis.site_collection)
sites (PolyhedralSiteCollection attribute)
(SiteCollection attribute)
sites_contain_points() (PolyhedralSiteCollection method)
(SiteCollection method)
sites_from_vertex_indices() (site_analysis.polyhedral_site.PolyhedralSite class method)
sites_trajectory (Trajectory attribute)
species_string_from_site() (in module site_analysis.tools)
SphericalSite (class in site_analysis.spherical_site)
SphericalSiteCollection (class in site_analysis.spherical_site_collection)
st (Trajectory attribute)
T
to() (Atom method)
trajectory (Atom attribute)
Trajectory (class in site_analysis.trajectory)
trajectory (PolyhedralSite attribute)
(Site attribute)
trajectory_from_structures() (Trajectory method)
transitions (PolyhedralSite attribute)
(Site attribute)
U
update_occupation() (in module site_analysis.trajectory)
(SiteCollection method)
V
vertex_indices (PolyhedralSite attribute)
VoronoiSite (class in site_analysis.voronoi_site)
VoronoiSiteCollection (class in site_analysis.voronoi_site_collection)
X
x_pbc() (in module site_analysis.tools)
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