site\_analysis.reference\_workflow
----------------------------------

.. automodule:: site_analysis.reference_workflow
    :members:
    :undoc-members:
    :show-inheritance:

.. automodule:: site_analysis.reference_workflow.reference_based_sites
    :members:
    :undoc-members:
    :show-inheritance:

.. automodule:: site_analysis.reference_workflow.structure_aligner
    :members:
    :undoc-members:
    :show-inheritance:

.. automodule:: site_analysis.reference_workflow.coord_finder
    :members:
    :undoc-members:
    :show-inheritance:

.. automodule:: site_analysis.reference_workflow.index_mapper
    :members:
    :undoc-members:
    :show-inheritance:

.. automodule:: site_analysis.reference_workflow.site_factory
    :members:
    :undoc-members:
    :show-inheritance: